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1

Maxsim2—Real-time interactive simulations for computer-assisted teaching of pharmacokinetics and pharmacodynamics

Gabrielsson, Johan, Andersson, Kristoffer, Tobin, Gunnar, Ingvast-Larsson, Carina, Jirstrand, Mats

Journal:

Computer Methods and Programs in Biomedicine

Year:

2014

Language:

english

File:

PDF, 3.43 MB

english, 2014

2

Extending existing structural identifiability analysis methods to mixed-effects models

Janzén, David L.I., Jirstrand, Mats, Chappell, Michael J., Evans, Neil D.

Journal:

Mathematical Biosciences

Year:

2018

Language:

english

File:

PDF, 471 KB

english, 2018

3

Dose-Response-Time Data Analysis: An Underexploited Trinity

Gabrielsson, Johan, Andersson, Robert, Jirstrand, Mats, Hjorth, Stephan, Schulte, Gunnar

Journal:

Pharmacological Reviews

Year:

2019

Language:

english

File:

PDF, 1.69 MB

english, 2019

4

Kinetic models in industrial biotechnology – Improving cell factory performance

Almquist, Joachim, Cvijovic, Marija, Hatzimanikatis, Vassily, Nielsen, Jens, Jirstrand, Mats

Journal:

Metabolic Engineering

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

5

[ACM Press the Second Workshop - Rennes, France (2018.12.10-2018.12.11)] Proceedings of the Second Workshop on Distributed Infrastructures for Deep Learning - DIDL '18 - A Performance Evaluation of Federated Learning Algorithms

Nilsson, Adrian, Smith, Simon, Ulm, Gregor, Gustavsson, Emil, Jirstrand, Mats

Year:

2018

Language:

english

File:

PDF, 1.56 MB

english, 2018

6

Root cause analysis of failures and quality deviations in manufacturing using machine learning

Lokrantz, Anna, Gustavsson, Emil, Jirstrand, Mats

Journal:

Year:

2018

Language:

english

File:

PDF, 821 KB

english, 2018

7

Modeling industrial engineering change processes using the design structure matrix for sequence analysis: a comparison of multipleÂ projects

Arnarsson, ÃvarÂ Ãrn, Gustavsson, Emil, Jirstrand, Mats, Malmqvist, Johan

Journal:

Year:

2020

File:

PDF, 1.05 MB

2020

8

Nonlinear Control System Design by Quantifier Elimination

Journal:

Journal of Symbolic Computation

Year:

1997

Language:

english

File:

PDF, 429 KB

english, 1997

9

A method for zooming of nonlinear models of biochemical systems

Mikael Sunnåker, Gunnar Cedersund, Mats Jirstrand

Journal:

BMC Systems Biology

Year:

2011

Language:

english

File:

PDF, 390 KB

english, 2011

10

Biochemical modeling with Systems Biology Graphical Notation

Andreas Jansson, Mats Jirstrand

Journal:

Drug Discovery Today

Year:

2010

Language:

english

File:

PDF, 511 KB

english, 2010

11

In silico simulation of fibrillation in canine atrial tissue using detailed ion-channel models including drug interaction effects

Joachim Almquist, Mikael Wallman, Ingemar Jacobson, Mats Jirstrand

Journal:

Journal of Electrocardiology

Year:

2011

Language:

english

File:

PDF, 53 KB

english, 2011

12

Zooming of states and parameters using a lumping approach including back-translation

Mikael Sunnåker, Henning Schmidt, Mats Jirstrand, Gunnar Cedersund

Journal:

BMC Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.96 MB

english, 2010

13

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology

Schmidt, H., Jirstrand, M.

Journal:

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

14

Minimal output sets for identifiability

Milena Anguelova, Johan Karlsson, Mats Jirstrand

Journal:

Mathematical Biosciences

Year:

2012

Language:

english

File:

PDF, 443 KB

english, 2012

15

Modeling the Effect of Kv1.5 Block on the Canine Action Potential

Almquist, Joachim, Wallman, Mikael, Jacobson, Ingemar, Jirstrand, Mats

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 556 KB

english, 2010

16

Comparison of approaches for parameter identifiability analysis of biological systems

Raue, A., Karlsson, J., Saccomani, M. P., Jirstrand, M., Timmer, J.

Journal:

Year:

2014

Language:

english

File:

PDF, 658 KB

english, 2014

17

A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model

Krengel, Annette, Hauth, Jan, Taskinen, Marja-Riitta, Adiels, Martin, Jirstrand, Mats

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 1.85 MB

english, 2013

18

Stochastic differential equations as a tool to regularize the parameter estimation problem for continuous time dynamical systems given discrete time measurements

Leander, Jacob, Lundh, Torbjörn, Jirstrand, Mats

Journal:

Mathematical Biosciences

Year:

2014

Language:

english

File:

PDF, 1.55 MB

english, 2014

19

[IEEE 1999 Conference on Decision and Control - Phoenix, AZ, USA (7-10 Dec. 1999)] Proceedings of the 38th IEEE Conference on Decision and Control (Cat. No.99CH36304) - A negative result on piecewise quadratic Lyapunov functions for decay rate analysis

Spangeus, P., Jirstrand, M.

Year:

1999

Language:

english

File:

PDF, 345 KB

english, 1999

20

[IEEE 37th IEEE Conference on Decision and Control - Tampa, FL, USA (16-18 Dec. 1998)] Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No.98CH36171) - Invariant sets for a class of hybrid systems

Year:

1998

Language:

english

File:

PDF, 583 KB

english, 1998

21

[IEEE 37th IEEE Conference on Decision and Control - Tampa, FL, USA (16-18 Dec. 1998)] Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No.98CH36171) - On stability and passivity of a class of hybrid systems

Pogromsky, A.Yu., Jirstrand, M., Spangeus, P.

Year:

1998

Language:

english

File:

PDF, 652 KB

english, 1998

22

Joint Feedback Analysis Modeling of Nonesterified Fatty Acids in Obese Zucker Rats and Normal Sprague-Dawley Rats after Different Routes of Administration of Nicotinic Acid

Tapani, Sofia, Almquist, Joachim, Leander, Jacob, Ahlström, Christine, Peletier, Lambertus A., Jirstrand, Mats, Gabrielsson, Johan

Journal:

Journal of Pharmaceutical Sciences

Year:

2014

Language:

english

File:

PDF, 2.30 MB

english, 2014

23

[IEEE ICASSP 2012 - 2012 IEEE International Conference on Acoustics, Speech and Signal Processing - Kyoto, Japan (2012.03.25-2012.03.30)] 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP) - Optimal posterior density approximation for bearings-only tracking

Morelande, Mark R., Svensson, Lennart, Hagmar, Jonas, Jirstrand, Mats

Year:

2012

Language:

english

File:

PDF, 184 KB

english, 2012

24

Yeast AMP-activated Protein Kinase Monitors Glucose Concentration Changes and Absolute Glucose Levels

Bendrioua, L., Smedh, M., Almquist, J., Cvijovic, M., Jirstrand, M., Goksor, M., Adiels, C. B., Hohmann, S.

Journal:

Journal of Biological Chemistry

Year:

2014

Language:

english

File:

PDF, 3.23 MB

english, 2014

25

Using sensitivity equations for computing gradients of the FOCE and FOCEI approximations to the population likelihood

Almquist, Joachim, Leander, Jacob, Jirstrand, Mats

Journal:

Journal of Pharmacokinetics and Pharmacodynamics

Year:

2015

Language:

english

File:

PDF, 748 KB

english, 2015

26

Mixed Effects Modeling Using Stochastic Differential Equations: Illustrated by Pharmacokinetic Data of Nicotinic Acid in Obese Zucker Rats

Leander, Jacob, Almquist, Joachim, Ahlström, Christine, Gabrielsson, Johan, Jirstrand, Mats

Journal:

The AAPS Journal

Year:

2015

Language:

english

File:

PDF, 789 KB

english, 2015

27

Investigations of a compartmental model for leucine kinetics using non-linear mixed effects models with ordinary and stochastic differential equations

Berglund, M., Sunnaker, M., Adiels, M., Jirstrand, M., Wennberg, B.

Journal:

Mathematical Medicine and Biology

Year:

2012

Language:

english

File:

PDF, 667 KB

english, 2012

28

Heterogeneous kinetics of AKT signaling in individual cells are accounted for by variable protein concentration

Meyer, René, D'Alessandro, Lorenza A., Kar, Sandip, Kramer, Bernhard, She, Bin, Kaschek, Daniel, Hahn, Bettina, Wrangborg, David, Karlsson, Johan, Kvarnström, Mats, Jirstrand, Mats, Lehmann, Wolf-Diet

Journal:

Frontiers in Physiology

Year:

2012

Language:

english

File:

PDF, 1.99 MB

english, 2012

29

Information Technology in Systems Biology (Informationstechnologien in der Systembiologie)

Schmidt, Henning, Jirstrand, Mats, Wolkenhauer, Olaf

Journal:

it - Information Technology

Year:

2006

Language:

english

File:

PDF, 245 KB

english, 2006

30

Dose–response-time modelling: Second-generation turnover model with integral feedback control

Andersson, Robert, Jirstrand, Mats, Peletier, Lambertus, Chappell, Michael J., Evans, Neil D., Gabrielsson, Johan

Journal:

European Journal of Pharmaceutical Sciences

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

31

Structural Identifiability in Mixed-Effects Models: Two different approaches∗∗This work is funded through the Marie Curie FP7 People ITN European Industrial Doctorate (EID) project, IMPACT (Innovative Modelling for Pharmacological Advances through Collaborative Training).

Janzén, David, Jirstrand, Mats, Evans, Neil D., Chappell, Michael

Journal:

IFAC-PapersOnLine

Year:

2015

Language:

english

File:

PDF, 446 KB

english, 2015

32

[IEEE 37th IEEE Conference on Decision and Control - Tampa, FL, USA (16-18 Dec. 1998)] Proceedings of the 37th IEEE Conference on Decision and Control (Cat. No.98CH36171) - A linear programming approach to the design of thermostat controllers of interconnected thermal systems

Jirstrand, M., Spangeus, P.

Year:

1998

Language:

english

File:

PDF, 462 KB

english, 1998

33

[IEEE Proceedings of 16th American CONTROL Conference - Albuquerque, NM, USA (1997.6.6-1997.6.6)] Proceedings of the 1997 American Control Conference (Cat. No.97CH36041) - Curve following for nonlinear dynamic systems subject to control constraints

Year:

1997

Language:

english

File:

PDF, 477 KB

english, 1997

34

Three novel approaches to structural identifiability analysis in mixed-effects models

Janzén, David L.I., Jirstrand, Mats, Chappell, Michael J., Evans, Neil D.

Journal:

Computer Methods and Programs in Biomedicine

Year:

2016

Language:

english

File:

PDF, 1.59 MB

english, 2016

35

THE GRÖBNER BASIS METHOD IN CONTROL DESIGN: AN OVERVIEW

Nešić, D., Mareels, I.M.Y., Glad, T., Jirstrand, M.

Journal:

IFAC Proceedings Volumes

Year:

2002

Language:

english

File:

PDF, 1.33 MB

english, 2002

36

An Efficient Method for Structural Identifiability Analysis of Large Dynamic Systems*

Karlsson, Johan, Anguelova, Milena, Jirstrand, Mats

Journal:

IFAC Proceedings Volumes

Year:

2012

Language:

english

File:

PDF, 338 KB

english, 2012

37

Toward Quantifying the Thymic Dysfunctional State in Mouse Models of Inflammatory Bowel Disease

Jansson, Andreas, Pernestig, Anna-Karin, Nilsson, Patric, Jirstrand, Mats, Hultgren Hörnquist, Elisabeth

Journal:

Inflammatory Bowel Diseases

Year:

2013

Language:

english

File:

PDF, 277 KB

english, 2013

38

Tumor Static Concentration Curves in Combination Therapy

Cardilin, Tim, Almquist, Joachim, Jirstrand, Mats, Sostelly, Alexandre, Amendt, Christiane, El Bawab, Samer, Gabrielsson, Johan

Journal:

The AAPS Journal

Year:

2017

Language:

english

File:

PDF, 891 KB

english, 2017

39

Modeling of free fatty acid dynamics: insulin and nicotinic acid resistance under acute and chronic treatments

Andersson, Robert, Kroon, Tobias, Almquist, Joachim, Jirstrand, Mats, Oakes, Nicholas D., Evans, Neil D., Chappel, Michael J., Gabrielsson, Johan

Journal:

Journal of Pharmacokinetics and Pharmacodynamics

Year:

2017

Language:

english

File:

PDF, 2.03 MB

english, 2017

40

Moving the State between Equilibria

Jirstrand, M., Glad, S.T.

Journal:

IFAC Proceedings Volumes

Year:

1998

Language:

english

File:

PDF, 1.42 MB

english, 1998

41

Model-based evaluation of radiation and radiosensitizing agents in oncology

Cardilin, Tim, Almquist, Joachim, Jirstrand, Mats, Zimmermann, Astrid, El Bawab, Samer, Gabrielsson, Johan

Journal:

CPT: Pharmacometrics & Systems Pharmacology

Year:

2017

Language:

english

File:

PDF, 2.47 MB

english, 2017

42

Parameter Identifiability of Fundamental Pharmacodynamic Models

Janzén, David L. I., Bergenholm, Linnéa, Jirstrand, Mats, Parkinson, Joanna, Yates, James, Evans, Neil D., Chappell, Michael J.

Journal:

Frontiers in Physiology

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

43

Evaluation and Translation of Combination Therapies in Oncology – A Quantitative Approach

Cardilin, Tim, Almquist, Joachim, Jirstrand, Mats, Gabrielsson, Johan

Journal:

European Journal of Pharmacology

Year:

2018

Language:

english

File:

PDF, 1.42 MB

english, 2018

44

SAE Technical Paper Series [SAE International SAE 2001 World Congress - (MAR. 05, 2001)] SAE Technical Paper Series - Object-Oriented Modeling of Intake Air Flow Control System

Carlsson, T., Sokolov, A., Idebrant, A., Jirstrand, M.

Year:

2001

Language:

english

File:

PDF, 350 KB

english, 2001

45

Exact Gradients Improve Parameter Estimation in Nonlinear Mixed Effects Models with Stochastic Dynamics

Olafsdottir, Helga Kristin, Leander, Jacob, Almquist, Joachim, Jirstrand, Mats

Journal:

The AAPS Journal

Year:

2018

Language:

english

File:

PDF, 1.57 MB

english, 2018

46

Modelling of oscillatory cortisol response in horses using a Bayesian population approach for evaluation of dexamethasone suppression test protocols

Held, Felix, Ekstrand, Carl, Cvijovic, Marija, Gabrielsson, Johan, Jirstrand, Mats

Journal:

Journal of Pharmacokinetics and Pharmacodynamics

Year:

2019

File:

PDF, 1.57 MB

2019

47

Challenge model of TNFα turnover at varying LPS and drug provocations

Held, Felix, Hoppe, Edmund, Cvijovic, Marija, Jirstrand, Mats, Gabrielsson, Johan

Journal:

Journal of Pharmacokinetics and Pharmacodynamics

Year:

2019

File:

PDF, 2.17 MB

2019

48

Modeling long-term tumor growth and kill after combinations of radiation and radiosensitizing agents

Cardilin, Tim, Almquist, Joachim, Jirstrand, Mats, Zimmermann, Astrid, Lignet, Floriane, El Bawab, Samer, Gabrielsson, Johan

Journal:

Cancer Chemotherapy and Pharmacology

Year:

2019

Language:

english

File:

PDF, 2.75 MB

english, 2019

49

Reinforcement learning in real-time geometry assurance

Jorge, Emilio, Brynte, Lucas, Cronrath, Constantin, Wigström, Oskar, Bengtsson, Kristofer, Gustavsson, Emil, Lennartson, Bengt, Jirstrand, Mats

Journal:

Year:

2018

Language:

english

File:

PDF, 451 KB

english, 2018

50

Supporting Knowledge Re-Use with Effective Searches of Related Engineering Documents - A Comparison of Search Engine and Natural Language Processing-Based Algorithms

Arnarsson, Ivar Örn, Frost, Otto, Gustavsson, Emil, Stenholm, Daniel, Jirstrand, Mats, Malmqvist, Johan

Journal:

Proceedings of the Design Society: International Conference on Engineering Design

Year:

2019

Language:

english

File:

PDF, 671 KB

english, 2019

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